![]() There are several notes regarding specific model behaviors for train. The default training grid would produce nine combinations in this two-dimensional space. ![]() As another example, regularized discriminant analysis (RDA) models have two parameters ( gamma and lambda), both of which lie on. By default, if p is the number of tuning parameters, the grid size is 3^p. For these models, train can automatically create a grid of tuning parameters. train works with specific models (see train Model List or train Models By Tag). The column " Kappa" is Cohen's (unweighted) Kappa statistic averaged across the resampling results. The agreement standard deviation is also calculated from the cross-validation results. The column labeled " Accuracy" is the overall agreement rate averaged over cross-validation iterations. The default values tested for this model are shown in the first two columns ( shrinkage is not shown beause the grid set of candidate models all use a value of 0.1 for this tuning parameter). learning rate: how quickly the algorithm adapts, called shrinkage.trees, (called n.trees in the gbm function) The final values used for the model were n.trees = 150, pth = 2 and shrinkage = 0.1.įor a gradient boosting machine (GBM) model, there are three main tuning parameters: Tuning parameter 'shrinkage' was held constant at a value of 0.1Īccuracy was used to select the optimal model using the largest value. pth n.trees Accuracy Kappa Accuracy SD Kappa SD Resampling results across tuning parameters: Resampling: Cross-Validated (10 fold, repeated 10 times) By default, the function automatically chooses the tuning parameters associated with the best value, although different algorithms can be used (see details below below). After resampling, the process produces a profile of performance measures is available to guide the user as to which tuning parameter values should be chosen. Currently, k-fold cross-validation (once or repeated), leave-one-out cross-validation and bootstrap (simple estimation or the 632 rule) resampling methods can be used by train. Once the model and tuning parameter values have been defined, the type of resampling should be also be specified. For example, if fitting a Partial Least Squares (PLS) model, the number of PLS components to evaluate must be specified. The first step in tuning the model (line 1 in the algorithm above is to choose a set of parameters to evaluate. On these pages, there are lists of tuning parameters that can potentially be optimized. Currently, 180 are available using caret see train Model List or train Models By Tagfor details. estimate model performance from a training setįirst, a specific model must be chosen.choose the "optimal" model across these parameters.evaluate, using resampling, the effect of model tuning parameters on performance.The caret package has several functions that attempt to streamline the model building and evaluation process.
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